PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G038500.1
Common NameB456_009G038500, LOC105769282
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 504aa    MW: 54145.5 Da    PI: 4.8273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G038500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-11277322555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+el+P++      K +Ka+iL + + Y+k Lq
  Gorai.009G038500.1 277 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASILDEIIGYVKFLQ 322
                         99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-11270326No hitNo description
SuperFamilySSF474591.14E-16270333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.882272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16274332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDDYLDQYFS SSSWSDVNVK ERSYWVHNEP DQPNEVFPSS NFNSIECLAA HNTPPLVHNR  60
GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLNTDV HSSGSSSLVS  120
LNDVPVVGDM IPSLSFNERG RMISNGGESS EFRRSFTGLE TLSPIPQLWH LQPYDSVSSL  180
PTLVGQTKVD DEGNINRFIE IDEILQPENL SASINSKGQQ DMQNSFYSSF PADHPITKTM  240
IGLPSLVQGA SPNLNNGSDR TAKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP  300
NSNKTDKASI LDEIIGYVKF LQLQVKVLSM SRLGAAAAVV PLITDGRAEV SNGLSLAPLA  360
GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS  420
SSSVPASDES KKLGFTNSTL INNTCSSSSS SSSNSSGSLP GVGIPNINAD GNFMTGMLGS  480
DIMAKGCTGT FKQEELNTLC TAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153241e-172JX615324.1 Gossypium hirsutum clone NBRI_GE59251 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445260.10.0PREDICTED: uncharacterized protein LOC105769282
TrEMBLA0A0D2TJ480.0A0A0D2TJ48_G
STRINGVIT_11s0016g00380.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-56LJRHL1-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]